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Morissette, L, Despatie S-P, Savenkoff C, Hammill MO, Bourdages H, Chabot D.  2003.  Data gathering and input parameters to construct ecosystem models for the northern Gulf of St. Lawrence (mid-1980s). :94.
Pauly, D, Trites A, Capuli E, Christensen V.  1995.  Diet composition and trophic levels of marine mammals. Abstract
Bonfil, R, Munro G, Sumaila UR, Valtysson H, Wright M, Pitcher T, Preikshot D, Haggan N, Pauly D.  1998.  Distant water fleets: An ecological, economic and social assessment. Abstract
Journal Article
Christensen, V, Walters CJ, Ahrens R, Alder J, Buszowski J, Christensen L B, Cheung WWL, Dunne J, Froese R, Karpouzi V et al..  2009.  Database-driven models of the world's Large Marine Ecosystems. Ecological Modelling. 220:1984-1996. Abstract
Link, JS, Ihde TF, Harvey CJ, Gaichas SK, Field JC, Brodziak JKT, Townsend HM, Peterman RM.  2012.  Dealing with Uncertainty in Ecosystem Models: The Paradox of Use for Living Marine Resource Management. Progress in Oceanography.
Rochette, S, Lobry J, Lepage M, Boët P.  Submitted.  Dealing with uncertainty in qualitative models with a semi-quantitative approach based on simulations. Application to the Gironde estuarine food web (France). Ecological Modelling. In Press, Corrected Proof Abstract
Coll, M, Palomera I, Tudela S.  2009.  Decadal changes in a NW Mediterranean Sea food web in relation to fishing exploitation. Ecological Modelling. 220:2088-2102. Abstract
Freire, KMF, Christensen V, Pauly D.  2008.  Description of the East Brazil Large Marine Ecosystem using a trophic model. Scientia Marina. 72:477-491. Abstract
Araújo, JN, Bundy A.  2011.  Description of three Ecopath with Ecosim ecosystem models developed for the Bay of Fundy, Western Scotian Shelf and NAFO Division 4X. Canadian Technical Report of Fisheries and Aquatic Science. 2952
Luczkovich, JJ, Ward GP, Johnson JC, Christian RR, Baird D, Neckles H, Rizzo WM.  2002.  Determining the trophic guilds of fishes and macroinvertebrates in a seagrass food web. Estuaries. 25:1143-1163. Abstract
Tudela, S, Coll M, Palomera I.  2005.  Developing an operational reference framework for fisheries management on the basis of a two-dimensional index of ecosystem impact. Ices Journal of Marine Science. 62:585-591. Abstract
Lobry, J, David V, Pasquaud S, Lepage M, Sautour B, Rochard E.  2008.  Diversity and stability of an estuarine trophic network. Marine Ecology-Progress Series. 358:13-25.
Aoki, I.  2003.  Diversity-productivity-stability relationship in freshwater ecosystems: Whole-systemic view of all trophic levels. Ecological Research. 18:397-404. Abstract
Christensen, V, Pauly D.  1990.  A draft guide to the ECOPATH II program (ver. 1.0).. ICLARM Software 6, 22 p..
Robinson, LA, Frid CLJ.  2003.  Dynamic ecosystem models and the evaluation of ecosystem effects of fishing: can we make meaningful predictions? Aquatic Conservation-Marine and Freshwater Ecosystems. 13:5-20. Abstract
Watson, R, Alder J, Walters C.  2000.  A dynamic mass-balance model for marine protected areas. Fish and Fisheries. 1:94-98. Abstract
Ortiz, M, Wolff M.  2002.  Dynamical simulation of mass-balance trophic models for benthic communities of north-central Chile: assessment of resilience time under alternative management scenarios. Ecological Modelling. 148:277-291. Abstract
Book Chapter
Samb, B, Mendy A.  2002.  Dynamique du réseau trophique de l'écosystème sénégambien en 1990. Modèles trophiques des ecosystèmes marins nord-ouest africains / Trophic models of northwest African marine ecosystems. Projet SIAP, Module Ecopath, Document Technique N° 3 (SIAP/EP/DT/03). :35-51.