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2012
Cisneros-Montemayor, AM, Christensen V, Arreguín-Sánchez F, Sumaila UR.  2012.  Ecosystem models for management advice: An analysis of recreational and commercial fisheries policies in Baja California Sur, Mexico. Ecological Modelling. 228:8-16.
Díaz-Uribe, JG, Arreguín-Sánchez F, Lercari-Bernier D, Cruz-Escalona VH, Zetina-Rejón MJ, del-Monte-Luna P, Martínez-Aguilar S.  2012.  An integrated ecosystem trophic model for the North and Central Gulf of California: An alternative view for endemic species conservation. Ecological Modelling. 230:73-91.
2004
Morales-Zárate, MV, Arreguín-Sánchez F, López-Martínez J, Lluch-Cota SE.  2004.  Ecosystem trophic structure and energy flux in the Northern Gulf of California, México. Ecological Modelling. 174:331-345. Abstract
1996
Arreguín-Sánchez, F, Valero E.  1996.  Trophic role of the red grouper (Epinephelus morio) in the ecosystem of the northern continental shelf of Yucatan, Mexico. :19-27. Abstract
1995
Arreguín-Sánchez, F, Chavez EA.  1995.  An Investigation of the Trophic Role of 3 Pelagic Fishes in a Tropical Coastal Ecosystem of the Western Gulf-of-Mexico, Using the Ecopath-Ii Model. Scientia Marina. 59:307-315.
1993
Arreguín-Sánchez, F, Seijo JC, Valero-Pacheco E.  1993.  An application of ECOPATH II to the north continental shelf ecosystem of Yucatan, Mexico. :269-278. Abstract
Arreguín-Sánchez, F, Valero-Pacheco E, Chavez EA.  1993.  A trophic box model of the coastal fish communities of the southwestern Gulf of Mexico. :197-205. Abstract