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Book
Mackinson, S, Vasconcellos M, Pitcher T, Walters C, Sloman K.  1997.  Ecosystem impacts of harvesting small pelagic fish in upwelling systems: Using a dynamic mass-balance model. :731-749. Abstract
Book Chapter
Mackinson, S.  2001.  Representing trophic interactions in the North Sea in the 1880s, using the Ecopath mass-balance approach. Fisheries Impacts on North Atlantic Ecosystems: Models and Analyses. :35-98.
Conference Paper
Lauria, V, Pinnegar J, Mackinson S, Votier S, Edwards M, Attrill M, Brown A, Campbell MS.  2010.  Effects of fishing and climate on apex main predators: Ecopath with Ecosim modelling the Celtic Sea ecosystem. Proceedings from the 2010 AGU Ocean Sciences Meeting.
Journal Article
Araujo, JN, Mackinson S, Stanford RJ, Sims DW, Southward AJ, Hawkins SJ, Ellis JR, Hart PJB.  2006.  Modelling food web interactions, variation in plankton production, and fisheries in the western English Channel ecosystem. Marine Ecology-Progress Series. 309:175-187.
Vasconcellos, M, Mackinson S, Sloman K, Pauly D.  1997.  The stability of trophic mass-balance models of marine ecosystems: A comparative analysis. Ecological Modelling. 100:125-134. Abstract
Gascuel, D, Merino G, Doring R, Druon JN, Goti L, Guenette S, Macher C, Soma K, Travers-Trolet M, Mackinson S.  2012.  Towards theimplementationofanintegratedecosystemfleet-based management ofEuropeanfisheries. Marine Policy. 36:1022–1032.
Mackinson, S, Daskalov G, Heymans JJ, Neira S, Arancibia H, Zetina-Rejón M, Jiang H, Cheng HQ, Coll M, Arreguin-Sanchez F.  2009.  Which forcing factors fit? Using ecosystem models to investigate the relative influence of fishing and changes in primary productivity on the dynamics of marine ecosystems Ecological Modelling. 220:2972-2987.
Report
Lees, K, Mackinson S.  2007.  An Ecopath model of the Irish Sea: ecosystems properties and sensitivity analysis. CEFAS Science Series Technical Report 138. :40.
Trites, AW, Livingston PA, Vasconcellos MC, Mackinson S, Springer AM, Pauly D.  1999.  Ecosystem change and the decline of marine mammals in the Eastern Bering Sea: testing the ecosystem shift and commercial whaling hypotheses. :106. Abstract
Blanchard, JL, Pinnegar JK, Mackinson S.  2002.  Exploring marine mammal-fishery interactions using 'Ecopath with Ecosim': Modelling the Barents Sea ecosystem. :52.