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1985
Livingston, PA.  1985.  An ecosystem model evaluation: the importance of fish food habits data.. Mar. Fish. Rev.. 47:9-12..
1993
Lightfoot, C, Roger PA, Cagauan AG, Cruz CRD.  1993.  Preliminary steady-state nitrogen models of a wetland ricefield ecosystem with and without fish. :56-64. Abstract
Moreau, J, Ligtvoet W, Palomares MLD.  1993.  Trophic relationship in the fish community of Lake Victoria, Kenya, with emphasis on the impact of Nile perch (Lates niloticus). :144-152. Abstract
1994
Chookajorn, T, Leenanond Y, Moreau J, Sricharoendham B.  1994.  Evolution of trophic relationships in Ubolratana Reservoir (Thailand) as described using a multispecies trophic model. Asian Fisheries Science. 7:201-213. Abstract
Cagauan, AG, Cruz CRD, Lightfoot C.  1994.  Nitrogen models of lowland irrigated ecosystems with and without fish using Ecopath II. Abstract
1995
Arreguin-Sanchez, F, Chavez EA.  1995.  An investigation of the trophic role of three pelagic fishes in a tropical coastal ecosystem of the western Gulf of Mexico, using the ECOPATH II model. International symposium on middle-sized pelagic fish held in Las Palmas de Gran Canaria 24-28 january 1994. :307-315. Abstract
1997
Dalsgaard, JPT, Christensen V.  1997.  Flow modelling with ECOPATH: providing insights on the ecological state of agroecosystems.. Applications of Systems Approaches at the Farm and Regional Level. :203-212.
1999
Trites, AW, Livingston PA, Vasconcellos MC, Mackinson S, Springer AM, Pauly D.  1999.  Ecosystem change and the decline of marine mammals in the Eastern Bering Sea: testing the ecosystem shift and commercial whaling hypotheses. :106. Abstract
Lin, HJ, Shao KT, Kuo SR, Hsieh HL, Wong SL, Chen IM, Lo WT, Hung JJ.  1999.  A trophic model of a sandy barrier lagoon at Chiku in southwestern Taiwan. Estuarine Coastal and Shelf Science. 48:575-588. Abstract
2000
Bundy, A, Lilly GR, Shelton PA.  2000.  A mass balance model of the Newfoundland-Labrador Shelf. Abstract
Whipple, SJ, Link JS, Garrison LP, Fogarty MJ.  2000.  Models of predation and fishing mortality in aquatic ecosystems. Fish and Fisheries. 1:22-40. Abstract
2001
Selner, KG, Fisher N, Hager CH, Walter JF, Latour RJ.  2001.  Ecopath with Ecosim workshop, Patuxent wildlife centre, October 22-24, 2001. :23.
2002
Luczkovich, JJ, Ward GP, Johnson JC, Christian RR, Baird D, Neckles H, Rizzo WM.  2002.  Determining the trophic guilds of fishes and macroinvertebrates in a seagrass food web. Estuaries. 25:1143-1163. Abstract
2003
Zabel, RW, Harvey CJ, Katz SL, Good TP, Levin PS.  2003.  Ecologically Sustainable Yield - Marine conservation requires a new ecosystem-based concept for fisheriesmanagement that looks beyond sustainable yield for individual fish species. American Scientist. 91:150-157. Abstract
Rybarczyk, H, Elkaim B, Ochs L, Loquet N.  2003.  Analysis of the trophic network of a macrotidal ecosystem: the Bay of Somme (Eastern Channel). Estuarine Coastal and Shelf Science. 58:405-421. Abstract
Latour, RJ, Brush MJ, Bonzek CF.  2003.  Toward ecosystem-based fisheries management: Strategies for multispecies modeling and associated data requirements. Fisheries. 28:10-22. Abstract
2004
Morales-Zárate, MV, Arreguín-Sánchez F, López-Martínez J, Lluch-Cota SE.  2004.  Ecosystem trophic structure and energy flux in the Northern Gulf of California, México. Ecological Modelling. 174:331-345. Abstract
Brando, V E, Ceccarelli R, Libralato S, Ravagnan G.  2004.  Assessment of environmental management effects in a shallow water basin using mass-balance models. Ecological Modelling. 172:213-232. Abstract
2005
Pitcher, TJ, Ainsworth CH, Buchary EA, Cheung W, Forrest R, Haggan N, Lozano H, Morato T, Morissette L.  2005.  Strategic management of marine ecosystems using whole-ecosystem simulation modelling: The ‘back to the future’policy approach. Strategic management of marine ecosystems. :199–258.
2006
Feng, J, Wang H, Huang D, Li S.  2006.  Alternative attractors in marine ecosystems: A comparative analysis of fishing effects. Ecological Modelling. 195:377-384. Abstract
Villanueva, MC, Lalèyè P, Albaret JJ, Laë R, de Morais TL, Moreau J.  2006.  Comparative analysis of trophic structure and interactions of two tropical lagoons. Ecological Modelling. 197:461-477. Abstract
Chuenpagdee, R, Liguori L, Preikshot D, Pauly D.  2006.  A public sentiment index for ecosystem management. Ecosystems. 9:463-473. Abstract
Villanueva, MC, Laleye P, Albaret JJ, Lae R, de Morais LT, Moreau J.  2006.  Comparative analysis of trophic structure and interactions of two tropical lagoons. Ecological Modelling. 197:461-477.
Lin, HJ, Dai XX, Shao KT, Su HM, Lo WT, Hsieh HL, Fang LS, Hung JJ.  2006.  Trophic structure and functioning in a eutrophic and poorly flushed lagoon in southwestern Taiwan. Marine Environmental Research. 62:61-82.
Libralato, S, Christensen V, Pauly D.  2006.  A method for identifying keystone species in food web models. Ecological Modelling. 195:153-171. Abstract